Package: iccCounts 1.1.2

iccCounts: Intraclass Correlation Coefficient for Count Data

Estimates the intraclass correlation coefficient (ICC) for count data to assess repeatability (intra-methods concordance) and concordance (between-method concordance). In the concordance setting, the ICC is equivalent to the concordance correlation coefficient estimated by variance components. The ICC is estimated using the estimates from generalized linear mixed models. The within-subjects distributions considered are: Poisson; Negative Binomial with additive and proportional extradispersion; Zero-Inflated Poisson; and Zero-Inflated Negative Binomial with additive and proportional extradispersion. The statistical methodology used to estimate the ICC with count data can be found in Carrasco (2010) <doi:10.1111/j.1541-0420.2009.01335.x>.

Authors:Josep L. Carrasco <[email protected]>

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iccCounts.pdf |iccCounts.html
iccCounts/json (API)

# Install 'iccCounts' in R:
install.packages('iccCounts', repos = c('https://jlcarrascoub.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • AF - CD34+ count cell data
  • EPP - Sparrow fledglings paternity data
  • Grimso - Tick counts data

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 8 scripts 258 downloads 7 exports 46 dependencies

Last updated 1 years agofrom:e174b64e0f. Checks:9 OK. Indexed: yes.

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Doc / VignettesOKMar 28 2025
R-4.5-winOKMar 28 2025
R-4.5-macOKMar 28 2025
R-4.5-linuxOKMar 28 2025
R-4.4-winOKMar 28 2025
R-4.4-macOKMar 28 2025
R-4.4-linuxOKMar 28 2025
R-4.3-winOKMar 28 2025
R-4.3-macOKMar 28 2025

Exports:DispersionTestGOF_checkICCicc_countsplot_BAVarCompZeroTest

Dependencies:bootclicolorspaceDerivdplyrfansifarvergenericsggplot2glmmTMBgluegridExtragtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixmgcvminqamunsellnlmenloptrnumDerivpillarpkgconfigR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangscalestibbletidyselectTMButf8vctrsVGAMviridisLitewithr

Examples of assessment of agreement with count data

Rendered fromiccCounts_examples.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2024-02-29
Started: 2021-06-01