{ "_id": "6acdf075a14063b82c3ad487", "Package": "iccCounts", "Title": "Intraclass Correlation Coefficient for Count Data", "Version": "1.1.4", "Authors@R": "person(given = c(\"Josep\", \"L.\"),\nfamily = \"Carrasco\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jlcarrasco@ub.edu\")", "Maintainer": "Josep L. Carrasco ", "Description": "Estimates the intraclass correlation coefficient (ICC) for\ncount data to assess repeatability (intra-methods concordance)\nand concordance (between-method concordance). In the\nconcordance setting, the ICC is equivalent to the concordance\ncorrelation coefficient estimated by variance components. The\nICC is estimated using the estimates from generalized linear\nmixed models. The within-subjects distributions considered are:\nPoisson; Negative Binomial with additive and proportional\nextradispersion; Zero-Inflated Poisson; and Zero-Inflated\nNegative Binomial with additive and proportional\nextradispersion. The statistical methodology used to estimate\nthe ICC with count data can be found in Carrasco (2010)\n.", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "License": "GPL (>= 2)", "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-13 08:32:51 UTC", "User": "root" }, "Author": "Josep L. Carrasco [aut, cre]", "Config/pak/sysreqs": "cmake make libicu-dev", "Repository": "https://jlcarrascoub.r-universe.dev", "Date/Publication": "2026-01-30 13:32:38 UTC", "RemoteUrl": "https://github.com/cran/iccCounts", "RemoteRef": "HEAD", "RemoteSha": "28e11638056d10bb78b211b6013332bde6f940a2", "_user": "jlcarrascoub", "_type": "src", "_file": "iccCounts_1.1.4.tar.gz", "_fileid": "https://r2.ropensci.org/ee9a21e27f89f8b81c7c06db5428b25808eff45b93108f911a994b48b378b531", "_filesize": 1158625, "_sha256": "ee9a21e27f89f8b81c7c06db5428b25808eff45b93108f911a994b48b378b531", "_expires": "2027-01-21T08:48:51.000Z", "_created": "2026-10-13T08:32:51.000Z", "_published": "2026-10-13T08:48:53.453Z", "_buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 115204478516, "time": 181, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11798683365" }, { "job": 115204478508, "time": 193, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11799145184" }, { "job": 115204478496, "time": 214, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11799660736" }, { "job": 115204478498, "time": 192, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11798896595" }, { "job": 115202141964, "time": 369, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11798518208" }, { "job": 115204478473, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11798084513" }, { "job": 115204478572, "time": 133, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11798896451" }, { "job": 115204478486, "time": 124, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11798472826" }, { "job": 115204478595, "time": 139, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11799115082" } ], "_upstream": "https://github.com/cran/iccCounts", "_commit": { "id": "28e11638056d10bb78b211b6013332bde6f940a2", "author": "Josep L. Carrasco ", "committer": "cran-robot ", "message": "version 1.1.4\n", "time": 1769779958 }, "_maintainer": { "name": "Josep L. Carrasco", "email": "jlcarrasco@ub.edu", "login": "jlcarrascoub", "description": "", "uuid": 79377060 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "glmmTMB", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "Deriv", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "VGAM", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.1.0", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-05", "n": 1 } ], "_tags": [ { "name": "1.1.4", "date": "2026-01-30" } ], "_stars": 0, "_contributors": [ { "user": "jlcarrascoub", "count": 7, "uuid": 79377060 } ], "_userbio": { "uuid": 79377060, "type": "user", "name": "jlcarrascoUB", "followers": 0 }, "_downloads": { "count": 398, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/iccCounts" }, "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/iccCounts.html", "extra/manual.pdf" ], "_realowner": "jlcarrascoub", "_cranurl": false, "_releases": [ { "version": "1.0.1", "date": "2021-06-01" }, { "version": "1.0.2", "date": "2021-06-30" }, { "version": "1.0.3", "date": "2021-07-30" }, { "version": "1.1.0", "date": "2022-06-03" }, { "version": "1.1.1", "date": "2022-06-09" }, { "version": "1.1.2", "date": "2024-02-28" }, { "version": "1.1.4", "date": "2026-01-30" } ], "_exports": [ "DispersionTest", "GOF_check", "ICC", "icc_counts", "plot_BA", "VarComp", "ZeroTest" ], "_datasets": [ { "name": "AF", "title": "CD34+ count cell data", "object": "data", "class": [ "data.frame" ], "fields": [ "y", "id", "met" ], "rows": 40, "table": true, "tojson": true }, { "name": "EPP", "title": "Sparrow fledglings paternity data", "object": "data", "class": [ "data.frame" ], "fields": [ "Social", "id", "Year" ], "rows": 193, "table": true, "tojson": true }, { "name": "Grimso", "title": "Tick counts data", "object": "data", "class": [ "data.frame" ], "fields": [ "Tot", "TransectID", "Round" ], "rows": 520, "table": true, "tojson": true } ], "_help": [ { "page": "AF", "title": "CD34+ count cell data", "topics": [ "AF" ] }, { "page": "DispersionTest", "title": "Dispersion test for GLMM", "topics": [ "DispersionTest" ] }, { "page": "EPP", "title": "Sparrow fledglings paternity data", "topics": [ "EPP" ] }, { "page": "GOF_check", "title": "Goodness of fit for GLMM", "topics": [ "GOF_check" ] }, { "page": "Grimso", "title": "Tick counts data", "topics": [ "Grimso" ] }, { "page": "ICC", "title": "Prints the intraclass correlation coefficient", "topics": [ "ICC" ] }, { "page": "icc_counts", "title": "Intraclass correlation coefficient (ICC) for count data", "topics": [ "icc_counts" ] }, { "page": "plot_BA", "title": "Bland-Altman plot", "topics": [ "plot_BA" ] }, { "page": "plot.GOF", "title": "Goodness of fit plots", "topics": [ "plot.GOF" ] }, { "page": "VarComp", "title": "GLMM variance components", "topics": [ "VarComp" ] }, { "page": "ZeroTest", "title": "Zero-Inflation test for GLMM", "topics": [ "ZeroTest" ] } ], "_rundeps": [ "backports", "boot", "broom", "cli", "colorspace", "cowplot", "cpp11", "Deriv", "doBy", "dplyr", "farver", "forecast", "fracdiff", "generics", "ggplot2", "glmmTMB", "glue", "gridExtra", "gtable", "isoband", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "mgcv", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "pbkrtest", "pillar", "pkgconfig", "purrr", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang", "RTMB", "S7", "sandwich", "scales", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "timeDate", "TMB", "urca", "utf8", "vctrs", "VGAM", "viridisLite", "withr", "zoo" ], "_vignettes": [ { "source": "iccCounts_examples.Rmd", "filename": "iccCounts_examples.html", "title": "Examples of assessment of agreement with count data", "author": "Josep L. Carrasco", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Example 1. CD34+ count cell data", "Example 2. Tick counts data", "Example 3. Sparrow fledglings paternity", "References" ], "created": "2021-06-01 06:40:09", "modified": "2026-01-30 13:32:38", "commits": 3 } ], "_score": 2.0413926851582254, "_indexed": true, "_nocasepkg": "icccounts", "_universes": [ "jlcarrascoub" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.4", "date": "2026-10-13T08:35:07.000Z", "distro": "resolute", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/fec47f25a08479cb18c9d8c2845be6ea9776ea6f0f6d47d3cc91342c8f3a7385", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.6.1", "os": "linux", "version": "1.1.4", "date": "2026-10-13T08:35:26.000Z", "distro": "resolute", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/8216f389ba342fd9ea29e12e0c99f5d67bfeec1287052699270c4c52bca0f43e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.5.3", "os": "mac", "version": "1.1.4", "date": "2026-10-13T08:47:05.000Z", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/c47e9828f19bd0052aaca8f8f62ced05521167c8965a84de04b158d8f1e1f3f7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.6.1", "os": "mac", "version": "1.1.4", "date": "2026-10-13T08:35:22.000Z", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/d8b2e01d9d28a1344979f058a20d39dd48d0a6c4b34682af3aa40f10be6b3ce0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.4", "date": "2026-10-13T08:35:01.000Z", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/12c1a1c704230b1e390f62cfa7f7c7338580c9441974ead16d7390804505b932", "status": "success", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.7.0", "os": "win", "version": "1.1.4", "date": "2026-10-13T08:34:10.000Z", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/42818e8598155c3c358656c3d3035e68a5d1ac7eef084bdd45bb7e4e1485fe3e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.5.3", "os": "win", "version": "1.1.4", "date": "2026-10-13T08:34:08.000Z", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/516058103b63828288f144e2cc1985edb5b88500726c92d28346cd72af75e8b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" }, { "r": "4.6.1", "os": "win", "version": "1.1.4", "date": "2026-10-13T08:34:25.000Z", "commit": "28e11638056d10bb78b211b6013332bde6f940a2", "fileid": "https://r2.ropensci.org/f0c2683fcf81d3ea87b810200b46aca3d56020f4fc832f0db17d3836fae7b1e8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/jlcarrascoub/actions/runs/38369300020" } ] }